Re: SETENV Command

From: Ahamarshan jn (ashgene_at_yahoo.co.in)
Date: 07/19/05

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    Date: Tue, 19 Jul 2005 06:59:38 -0700 (PDT)
To: For users of Fedora Core releases <fedora-list@redhat.com>

    I did give this command
    export
    PHRED_PARAMETER_FILE=/usr/local/etc/PhredPar/phred.dat
     and then I could run the program well, but the
    environment variable is set transiently ie when i
    logout and then relogin i need to give this command
    again to set the env variables. I think this works
    only locally, I am using an other program (Partigene)
    that calls the Phred program to do a set of jobs and
    here i face a lot of difficulty.
    How can i set up the env variable Globally and not
    Locally such that I dont have to set it up everytime I
    run phred.

    also: Does editing the file .cshrc and.login help? how
    do I do that?. Is it safer to edit these files.

    - thnks
    ash

    --- Paul Howarth <paul@city-fan.org> wrote:

    > On Mon, 2005-07-18 at 10:53 -0700, Ahamarshan jn
    > wrote:
    > > just wondering if someone has installed
    > Phred/Phrap
    > > and Consed program on FEDORA CORE 2. I have
    > installed
    > > the program and also build them succesfully but i
    > > could not set the environmental variables when i
    > give
    > > the command
    > > setenv PHRED_PARAMETER_FILE
    > > /usr/local/etc/PhredPar/phred.dat i always get the
    > > message no command found for setenv and I could
    > not
    > > this invoke any program.
    > > I run set env from c shell.
    >
    > The default shell in Fedora is bash, not csh. setenv
    > is a csh command
    > that does not exist in bash. The bash equivalent
    > would be:
    >
    > export
    >
    PHRED_PARAMETER_FILE=/usr/local/etc/PhredPar/phred.dat
    >
    > Paul.
    > --
    > Paul Howarth <paul@city-fan.org>
    >
    > --
    > fedora-list mailing list
    > fedora-list@redhat.com
    > To unsubscribe:
    > http://www.redhat.com/mailman/listinfo/fedora-list
    >

                    
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